If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ), 'gf_id' => 'HOM05D000898', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000898' ), 'data_identifier' => 'HOM05D000898', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000898', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '668', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16180' => 'bna', 'A02p42480' => 'bna', 'A03p14400' => 'bna', 'A03p16090' => 'bna', 'A03p32590' => 'bna', 'A05p44700' => 'bna', 'A06p29520' => 'bna', 'A07p36270' => 'bna', 'A10p11200' => 'bna', 'Aa31LG11G930' => 'aar', 'Aa31LG11G940' => 'aar', 'Aa31LG3G8010' => 'aar', 'Aa31LG4G10990' => 'aar', 'Aa31LG5G12330' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2841' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1647' => 'aag', 'Actinidia02696' => 'ach', 'Actinidia04918' => 'ach', 'Actinidia06071' => 'ach', 'Actinidia06072' => 'ach', 'Actinidia13558' => 'ach', 'Actinidia15650' => 'ach', 'Actinidia23572' => 'ach', 'Actinidia25033' => 'ach', 'Actinidia26217' => 'ach', 'Actinidia27486' => 'ach', 'Actinidia36025' => 'ach', 'Actinidia36026' => 'ach', 'Actinidia37656' => 'ach', 'Actinidia38748' => 'ach', 'Ah.02g131350' => 'amhyb', 'Ah.03g135460' => 'amhyb', 'Ah.10g031280' => 'amhyb', 'Ah.13g067230' => 'amhyb', 'AL1G10950' => 'aly', 'AL2G29130' => 'aly', 'AL3G10950' => 'aly', 'AL64U10010' => 'aly', 'AL8G39710' => 'aly', 'Aqoxy3G00764' => 'aox', 'Aqoxy3G00765' => 'aox', 'Aqoxy3G03271' => 'aox', 'Aqoxy7G00635' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0RFD3A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1UT67B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1ZU96Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51GDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57FE7T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6P9IS6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6UI1YP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9YKD4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ALIF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C2CW14' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DIV41R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EJQM10' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EYY49K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GN0B30' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GSS2QD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HAW4XI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L98ZRN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7824F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZDL55K' => 'arhy', 'AT1G69840' => 'ath', 'AT3G01290' => 'ath', 'AT5G51570' => 'ath', 'AT5G62740' => 'ath', 'ATR0810G044' => 'atr', 'ATR1120G009' => 'atr', 'ATR1120G125' => 'atr', 'Atru.chr1.641' => 'acertr', 'Atru.chr11.1846' => 'acertr', 'Atru.chr8.1908' => 'acertr', 'Atru.chr8.1909' => 'acertr', 'Atru.chr8.1910' => 'acertr', 'AUR62005726' => 'cqu', 'AUR62005727' => 'cqu', 'AUR62008356' => 'cqu', 'AUR62014262' => 'cqu', 'AUR62016107' => 'cqu', 'AUR62021740' => 'cqu', 'AUR62028833' => 'cqu', 'AUR62031640' => 'cqu', 'AUR62031641' => 'cqu', 'AUR62035053' => 'cqu', 'AUR62038870' => 'cqu', 'AUR62038872' => 'cqu', 'BcaB01g04165' => 'bca', 'BcaB02g09688' => 'bca', 'BcaB03g14762' => 'bca', 'BcaB05g22675' => 'bca', 'BcaB05g24491' => 'bca', 'BcaB07g29851' => 'bca', 'BcaC01g02516' => 'bca', 'BcaC01g04517' => 'bca', 'BcaC01g06130' => 'bca', 'BcaC03g15135' => 'bca', 'BcaC03g18170' => 'bca', 'BcaC05g26206' => 'bca', 'BcaC05g26207' => 'bca', 'BcaC05g30401' => 'bca', 'BcaC05g30476' => 'bca', 'BcaC08g46430' => 'bca', 'BcaC09g51585' => 'bca', 'BolC2t08761H' => 'bol', 'BolC2t12293H' => 'bol', 'BolC3t14285H' => 'bol', 'BolC3t16232H' => 'bol', 'BolC3t18652H' => 'bol', 'BolC6t39435H' => 'bol', 'BraA03t10900Z' => 'bra', 'BraA05t20858Z' => 'bra', 'BraA06t25898Z' => 'bra', 'BraA07t31199Z' => 'bra', 'C02p26980' => 'bna', 'C03p18940' => 'bna', 'C03p39680' => 'bna', 'C03p63980' => 'bna', 'C06p43630' => 'bna', 'C09p43810' => 'bna', 'C09p75280' => 'bna', 'CAN.G1128.4' => 'can', 'CAN.G1187.7' => 'can', 'CAN.G1711.3' => 'can', 'CAN.G277.9' => 'can', 'CAN.G38.27' => 'can', 'CAN.G628.41' => 'can', 'CANSAT56G3165' => 'cansat', 'CANSAT64G0319' => 'cansat', 'CANSAT80G2893' => 'cansat', 'CARHR062920' => 'chi', 'CARHR075740' => 'chi', 'CARHR264370' => 'chi', 'CARHR276530' => 'chi', 'Carub.0002s1653' => 'cru', 'Carub.0003s0086' => 'cru', 'Carub.0008s1161' => 'cru', 'Carub.0008s2347' => 'cru', 'Ca_04262_v3' => 'car', 'Ca_21848_v3' => 'car', 'Ca_22856_v3' => 'car', 'Ca_25236_v3' => 'car', 'CBR_g17733' => 'cbr', 'CBR_g27947' => 'cbr', 'CBR_g30423' => 'cbr', 'CBR_g41291' => 'cbr', 'CBR_g49906' => 'cbr', 'Cc02_g03940' => 'ccan', 'Cc04_g15530' => 'ccan', 'Cc07_g03000' => 'ccan', 'Cc11_g13450' => 'ccan', 'CDE04G0444' => 'cde', 'CDE04G3149' => 'cde', 'CDE06G1097' => 'cde', 'CDE09G1272' => 'cde', 'CDE11G1142' => 'cde', 'CDE12G0703' => 'cde', 'Cfa007511' => 'cfa', 'Cfa007512' => 'cfa', 'Cfa009031' => 'cfa', 'Cfa018990' => 'cfa', 'Ciclev10005343m.g' => 'ccl', 'Ciclev10012390m.g' => 'ccl', 'Ciclev10012398m.g' => 'ccl', 'Ciclev10021514m.g' => 'ccl', 'Ciclev10032213m.g' => 'ccl', 'CiPaw.03G030000' => 'cil', 'CiPaw.03G096600' => 'cil', 'CiPaw.04G019900' => 'cil', 'CiPaw.04G020000' => 'cil', 'CiPaw.05G139600' => 'cil', 'CiPaw.06G080900' => 'cil', 'CiPaw.11G038200' => 'cil', 'ClCG01G005140' => 'cla', 'ClCG05G007470' => 'cla', 'ClCG06G016370' => 'cla', 'ClCG08G008900' => 'cla', 'COL.COLO4_07926' => 'col', 'COL.COLO4_14172' => 'col', 'COL.COLO4_24282' => 'col', 'COL.COLO4_25175' => 'col', 'COL.COLO4_25176' => 'col', 'COL.COLO4_36929' => 'col', 'Cpa.g.sc17.204' => 'cpa', 'Cpa.g.sc3.279' => 'cpa', 'Cpa.g.sc5.273' => 'cpa', 'Cre16.g690879' => 'cre', 'CsaV3_1G002160' => 'csa', 'CsaV3_3G016320' => 'csa', 'CsaV3_5G005420' => 'csa', 'CsaV3_6G036250' => 'csa', 'CSS0006089' => 'camsi', 'CSS0012329' => 'camsi', 'CSS0018739' => 'camsi', 'CSS0020568' => 'camsi', 'CSS0021687' => 'camsi', 'CSS0027560' => 'camsi', 'CSS0031026' => 'camsi', 'CSS0036174' => 'camsi', 'CSS0037794' => 'camsi', 'CSS0043659' => 'camsi', 'CSS0046612' => 'camsi', 'CSS0049090' => 'camsi', 'DCAR_009431' => 'dca', 'DCAR_011163' => 'dca', 'DCAR_020206' => 'dca', 'DCAR_020762' => 'dca', 'DCAR_026071' => 'dca', 'Dinv06513' => 'din', 'Dinv19916' => 'din', 'Dinv22977' => 'din', 'Dinv33717' => 'din', 'Dinv33718' => 'din', 'Dinv34204' => 'din', 'Dinv38666' => 'din', 'Duzib068G0965' => 'dzi', 'Duzib068G1292' => 'dzi', 'Duzib147G0820' => 'dzi', 'Duzib187G0708' => 'dzi', 'Duzib205G0064' => 'dzi', 'Duzib205G1953' => 'dzi', 'Duzib248G1417' => 'dzi', 'Duzib251G0874' => 'dzi', 'Duzib268G0489' => 'dzi', 'ECA232G1578' => 'eca', 'ECA233G4102' => 'eca', 'ECA246G0063' => 'eca', 'ECA246G2043' => 'eca', 'ECA246G4231' => 'eca', 'ECA247G0625' => 'eca', 'EL10Ac2g02934' => 'bvu', 'EL10Ac2g02935' => 'bvu', 'EL10Ac2g02936' => 'bvu', 'EL10Ac2g02941' => 'bvu', 'EL10Ac3g05797' => 'bvu', 'EL10Ac6g13154' => 'bvu', 'Eucgr.B00427' => 'egr', 'Eucgr.B00428' => 'egr', 'Eucgr.B00429' => 'egr', 'Eucgr.G02545' => 'egr', 'Eucgr.G03423' => 'egr', 'Eucgr.G03424' => 'egr', 'Eucgr.G03433' => 'egr', 'Eucgr.K00148' => 'egr', 'Eucgr.K02450' => 'egr', 'Eucgr.L02479' => 'egr', 'Eucgr.L02775' => 'egr', 'Eucgr.L03359' => 'egr', 'FAN01G2410' => 'fan', 'FAN03G1099' => 'fan', 'FAN03G2700' => 'fan', 'FAN04G2470' => 'fan', 'FAN06G2283' => 'fan', 'FAN06G3382' => 'fan', 'FAN07G1801' => 'fan', 'FAN08G0379' => 'fan', 'FAN10G2407' => 'fan', 'FAN12G0578' => 'fan', 'FAN13G2015' => 'fan', 'FAN17G2468' => 'fan', 'FAN18G1919' => 'fan', 'FAN22G1754' => 'fan', 'FvH4_2g30440' => 'fve', 'FvH4_4g31920' => 'fve', 'FvH4_5g15490' => 'fve', 'FvH4_7g28140' => 'fve', 'Glyma.01G042600' => 'gma', 'Glyma.02G020900' => 'gma', 'Glyma.02G021200' => 'gma', 'Glyma.02G021400' => 'gma', 'Glyma.02G021500' => 'gma', 'Glyma.05G029800' => 'gma', 'Glyma.08G296600' => 'gma', 'Glyma.09G154400' => 'gma', 'Glyma.13G065000' => 'gma', 'Glyma.16G204900' => 'gma', 'Glyma.17G097000' => 'gma', 'Glyma.18G125600' => 'gma', 'Glyma.19G020000' => 'gma', 'Gohir.A03G064900' => 'ghi', 'Gohir.A07G064900' => 'ghi', 'Gohir.A09G044200' => 'ghi', 'Gohir.A10G056901' => 'ghi', 'Gohir.A10G100900' => 'ghi', 'Gohir.A12G166700' => 'ghi', 'Gohir.A12G264200' => 'ghi', 'Gohir.D03G091200' => 'ghi', 'Gohir.D07G069700' => 'ghi', 'Gohir.D09G045500' => 'ghi', 'Gohir.D10G088000' => 'ghi', 'Gohir.D12G170200' => 'ghi', 'Gohir.D12G264400' => 'ghi', 'Gorai.001G073500' => 'gra', 'Gorai.003G094600' => 'gra', 'Gorai.006G064900' => 'gra', 'Gorai.008G182800' => 'gra', 'Gorai.008G283900' => 'gra', 'Gorai.011G096600' => 'gra', 'GSVIVG01008060001' => 'vvi', 'GSVIVG01018528001' => 'vvi', 'GSVIVG01020071001' => 'vvi', 'GSVIVG01023024001' => 'vvi', 'HanXRQChr02g0045241' => 'han', 'HanXRQChr02g0049631' => 'han', 'HanXRQChr05g0158001' => 'han', 'HanXRQChr08g0221241' => 'han', 'HanXRQChr08g0221391' => 'han', 'HanXRQChr08g0224071' => 'han', 'HanXRQChr08g0235411' => 'han', 'HanXRQChr09g0265521' => 'han', 'HanXRQChr10g0290361' => 'han', 'HanXRQChr11g0329841' => 'han', 'HanXRQChr11g0335311' => 'han', 'HanXRQChr11g0347641' => 'han', 'HanXRQChr11g0351791' => 'han', 'HanXRQChr13g0411321' => 'han', 'HanXRQChr14g0427691' => 'han', 'HanXRQChr14g0428841' => 'han', 'HanXRQChr15g0484661' => 'han', 'HanXRQChr16g0498191' => 'han', 'Haze_07379' => 'cav', 'Haze_11739' => 'cav', 'Haze_12060' => 'cav', 'Haze_13831' => 'cav', 'Haze_20415' => 'cav', 'Hma1.2p1_0099F.1_g048980' => 'hma', 'Hma1.2p1_0104F.1_g050180' => 'hma', 'Hma1.2p1_0449F.1_g155020' => 'hma', 'Hma1.2p1_0449F.1_g155030' => 'hma', 'Hma1.2p1_2102F.1_g314050' => 'hma', 'HPP92_005536' => 'vpl', 'HPP92_005538' => 'vpl', 'HPP92_006460' => 'vpl', 'HPP92_009118' => 'vpl', 'HPP92_014670' => 'vpl', 'HPP92_027985' => 'vpl', 'Hund02667' => 'sun', 'Hund04634' => 'sun', 'Hund09368' => 'sun', 'Hund14751' => 'sun', 'Hund15636' => 'sun', 'Lalb_Chr01g0008791' => 'lal', 'Lalb_Chr02g0149911' => 'lal', 'Lalb_Chr02g0159501' => 'lal', 'Lalb_Chr03g0033151' => 'lal', 'Lalb_Chr03g0033161' => 'lal', 'Lalb_Chr05g0230221' => 'lal', 'Lalb_Chr06g0175491' => 'lal', 'Lalb_Chr06g0175501' => 'lal', 'Lalb_Chr08g0235921' => 'lal', 'Lj1g0010462' => 'lja', 'Lj1g0014506' => 'lja', 'Lj1g0018802' => 'lja', 'Lj1g0027277' => 'lja', 'Lj2g0002530' => 'lja', 'Lj2g0002960' => 'lja', 'Lj2g0015090' => 'lja', 'Lj2g0016333' => 'lja', 'Lj2g0027491' => 'lja', 'Lj3g0007626' => 'lja', 'Lj3g0024410' => 'lja', 'Lj4g0006682' => 'lja', 'Lj4g0010903' => 'lja', 'Lj5A115T72' => 'lonja', 'Lj6C794T4' => 'lonja', 'Lj6C794T5' => 'lonja', 'Lj8A37G36' => 'lonja', 'Lj9C460T2' => 'lonja', 'Lju41C27G12' => 'lonja', 'Lsat_1_v5_gn_1_10820' => 'lsa', 'Lsat_1_v5_gn_3_77940' => 'lsa', 'Lsat_1_v5_gn_4_176880' => 'lsa', 'Lsat_1_v5_gn_4_176901' => 'lsa', 'Lsat_1_v5_gn_5_19220' => 'lsa', 'Lsat_1_v5_gn_5_19280' => 'lsa', 'Lsat_1_v5_gn_6_70841' => 'lsa', 'Lsat_1_v5_gn_8_6781' => 'lsa', 'Lsat_1_v5_gn_8_8241' => 'lsa', 'Manes.01G190000' => 'mes', 'Manes.05G096900' => 'mes', 'Manes.06G095800' => 'mes', 'Manes.06G137400' => 'mes', 'Manes.17G021301' => 'mes', 'Mapoly0028s0002' => 'mpo', 'Mapoly0118s0010' => 'mpo', 'MBI04_g28286_MAGBIO' => 'mbi', 'MBI04_g28288_MAGBIO' => 'mbi', 'MBI04_g35157_MAGBIO' => 'mbi', 'MBI04_g35158_MAGBIO' => 'mbi', 'MBI04_g37553_MAGBIO' => 'mbi', 'MBI04_g37554_MAGBIO' => 'mbi', 'MBI12_g34014_MAGBIO' => 'mbi', 'MCO15G217' => 'mco', 'MD01G1185100' => 'mdo', 'MD06G1188200' => 'mdo', 'MD07G1257400' => 'mdo', 'MD09G1046700' => 'mdo', 'MD09G1046800' => 'mdo', 'MD09G1046900' => 'mdo', 'MD09G1047000' => 'mdo', 'MD13G1078800' => 'mdo', 'MD14G1194700' => 'mdo', 'MD16G1078400' => 'mdo', 'Medtr4g107700' => 'mtr', 'Medtr4g107720' => 'mtr', 'Medtr4g107730' => 'mtr', 'Medtr4g107760' => 'mtr', 'Medtr4g107810' => 'mtr', 'Medtr4g107830' => 'mtr', 'Medtr6g011380' => 'mtr', 'Medtr6g060500' => 'mtr', 'Medtr6g460470' => 'mtr', 'Medtr8g469160' => 'mtr', 'MELO3C005414.2' => 'cme', 'MELO3C006831.2' => 'cme', 'MELO3C017155.2' => 'cme', 'MELO3C019782.2' => 'cme', 'Migut.E01588' => 'egut', 'Migut.F00436' => 'egut', 'Migut.I00127' => 'egut', 'Migut.K00177' => 'egut', 'MSTRG.10767' => 'ama', 'MSTRG.11399' => 'ama', 'MSTRG.1702' => 'ama', 'MSTRG.26192' => 'ama', 'MSTRG.27176' => 'ama', 'MSTRG.6285' => 'ama', 'MSTRG.8805' => 'ama', 'Nitab4.5_0000002g0430' => 'nta', 'Nitab4.5_0000072g0460' => 'nta', 'Nitab4.5_0000141g0380' => 'nta', 'Nitab4.5_0000269g0190' => 'nta', 'Nitab4.5_0000269g0210' => 'nta', 'Nitab4.5_0000269g0300' => 'nta', 'Nitab4.5_0000785g0260' => 'nta', 'Nitab4.5_0001218g0010' => 'nta', 'Nitab4.5_0001218g0020' => 'nta', 'Nitab4.5_0002699g0030' => 'nta', 'Nitab4.5_0002752g0020' => 'nta', 'Nitab4.5_0004605g0130' => 'nta', 'Nitab4.5_0005670g0020' => 'nta', 'Nitab4.5_0006062g0020' => 'nta', 'Nitab4.5_0009895g0020' => 'nta', 'Nitab4.5_0015412g0010' => 'nta', 'Nn1g01247' => 'nnu', 'Nn3g17134' => 'nnu', 'Nn4g23048' => 'nnu', 'Nn4g23049' => 'nnu', 'Nn4g26385' => 'nnu', 'Oeu019264.1' => 'oeu', 'Oeu022631.1' => 'oeu', 'Oeu039211.1' => 'oeu', 'Oeu044225.1' => 'oeu', 'Oeu047023.1' => 'oeu', 'Oeu047024.1' => 'oeu', 'Os01g0588100' => 'osa', 'Os01g0588400' => 'osa', 'Os06g0135000' => 'osa', 'Os06g0136000' => 'osa', 'Os08g0398400' => 'osa', 'Os09g0361200' => 'osa', 'Os10g0464000' => 'osa', 'Peaxi162Scf00009g00333' => 'pax', 'Peaxi162Scf00013g00031' => 'pax', 'Peaxi162Scf00026g02316' => 'pax', 'Peaxi162Scf00059g00317' => 'pax', 'Peaxi162Scf00177g00815' => 'pax', 'Peaxi162Scf00234g00713' => 'pax', 'Peaxi162Scf00451g00935' => 'pax', 'Peaxi162Scf01372g00045' => 'pax', 'PGR083G1870' => 'pgr', 'PGR083G2664' => 'pgr', 'PGR119G0768' => 'pgr', 'PGR142G0878' => 'pgr', 'PGSC0003DMG400000857' => 'stu', 'PGSC0003DMG400002061' => 'stu', 'PGSC0003DMG400006939' => 'stu', 'PGSC0003DMG400025335' => 'stu', 'PGSC0003DMG400027412' => 'stu', 'PGSC0003DMG400031006' => 'stu', 'PGSC0003DMG400033035' => 'stu', 'Phvul.002G065600' => 'pvu', 'Phvul.002G066214' => 'pvu', 'Phvul.003G069500' => 'pvu', 'Phvul.003G069700' => 'pvu', 'Phvul.003G192700' => 'pvu', 'Phvul.004G026100' => 'pvu', 'Phvul.004G127900' => 'pvu', 'Potri.012G070500' => 'ptr', 'Potri.012G129000' => 'ptr', 'Potri.015G065001' => 'ptr', 'Potri.015G130600' => 'ptr', 'Potri.017G078000' => 'ptr', 'Potri.017G078100' => 'ptr', 'Pp3c16_9400' => 'ppa', 'Pp3c5_22340' => 'ppa', 'Pp3c5_9960' => 'ppa', 'Pp3c6_19850' => 'ppa', 'PRCOL_00002775' => 'pco', 'PRCOL_00006805' => 'pco', 'Prupe.1G268100' => 'ppe', 'Prupe.2G281600' => 'ppe', 'Prupe.3G271900' => 'ppe', 'Prupe.5G186400' => 'ppe', 'Psat1g077440' => 'psa', 'Psat1g077480' => 'psa', 'Psat1g111120' => 'psa', 'Psat1g111160' => 'psa', 'Psat2g137800' => 'psa', 'Psat4g053480' => 'psa', 'Psat4g053520' => 'psa', 'Psat4g130520' => 'psa', 'PSO423G0006' => 'pso', 'PSO423G0117' => 'pso', 'PSO478G3071' => 'pso', 'PSO591G0246' => 'pso', 'PSO591G0493' => 'pso', 'PSO675G6581' => 'pso', 'PSO675G8723' => 'pso', 'PSO732G0355' => 'pso', 'PSO732G0368' => 'pso', 'PSO732G0392' => 'pso', 'PSO782G5530' => 'pso', 'PSO832G0750' => 'pso', 'PSO832G1502' => 'pso', 'PSO832G1735' => 'pso', 'PSO832G4308' => 'pso', 'QL02p080600' => 'qlo', 'QL02p080614' => 'qlo', 'QL03p065614' => 'qlo', 'QL04p078806' => 'qlo', 'QL09p018743' => 'qlo', 'QL10p015603' => 'qlo', 'RcHm_v2.0_Chr1g0375061' => 'rch', 'RcHm_v2.0_Chr2g0169121' => 'rch', 'RcHm_v2.0_Chr2g0169131' => 'rch', 'RcHm_v2.0_Chr2g0169141' => 'rch', 'RcHm_v2.0_Chr4g0440581' => 'rch', 'RcHm_v2.0_Chr6g0283081' => 'rch', 'RcHm_v2.0_Chr7g0180601' => 'rch', 'RcHm_v2.0_Chr7g0234121' => 'rch', 'Rhsim03G0259800' => 'rsi', 'Rhsim08G0066200' => 'rsi', 'Rhsim08G0159700' => 'rsi', 'Rhsim08G0159800' => 'rsi', 'Rhsim09G0193300' => 'rsi', 'Rhsim12G0130000' => 'rsi', 'Sabra03G0030500' => 'sbr', 'Sabra10G0064200' => 'sbr', 'Sabra11G0082000' => 'sbr', 'Sabra11G0090700' => 'sbr', 'Sabra12G0050200' => 'sbr', 'Sabra12G0096800' => 'sbr', 'Sabra15G0143900' => 'sbr', 'Sabra17G0069300' => 'sbr', 'Sabra17G0069400' => 'sbr', 'SalBow1G3437' => 'sbo', 'SalBow1G4697' => 'sbo', 'SalBow1G7889' => 'sbo', 'SalBow4G0566' => 'sbo', 'SalBow4G2305' => 'sbo', 'Sc09g0006760' => 'sci', 'Sc11g0001700' => 'sci', 'Sc14g0006030' => 'sci', 'Sed0001159' => 'sed', 'Sed0007034' => 'sed', 'Sed0011610' => 'sed', 'Sed0014873' => 'sed', 'Sed0018611' => 'sed', 'Sed0021176' => 'sed', 'SEGI_01178' => 'sgi', 'SEGI_04260' => 'sgi', 'SEGI_04410' => 'sgi', 'SEGI_07367' => 'sgi', 'SEGI_09041' => 'sgi', 'SEGI_09149' => 'sgi', 'SEGI_17568' => 'sgi', 'SEGI_22821' => 'sgi', 'SEGI_24490' => 'sgi', 'SEGI_25343' => 'sgi', 'SEGI_32247' => 'sgi', 'SEGI_32503' => 'sgi', 'SEGI_36745' => 'sgi', 'SEGI_38906' => 'sgi', 'SEGI_40208' => 'sgi', 'SGA_v2.0_scaffold106G30565' => 'sas', 'SGA_v2.0_scaffold106G30567' => 'sas', 'SGA_v2.0_scaffold169G38701' => 'sas', 'SGA_v2.0_scaffold486G52384' => 'sas', 'SGA_v2.0_scaffold56G20056' => 'sas', 'SHI10819' => 'shi', 'SHI13878' => 'shi', 'SHI20813' => 'shi', 'SHI33372' => 'shi', 'SHI39700' => 'shi', 'SMO364G0526' => 'smo', 'SMO365G0055' => 'smo', 'Solyc02g067470.4' => 'sly', 'Solyc03g007190.3' => 'sly', 'Solyc03g058930.4' => 'sly', 'Solyc03g058940.4' => 'sly', 'Solyc03g113220.3' => 'sly', 'Solyc06g071050.4' => 'sly', 'Sopen01g006420' => 'spe', 'Sopen02g016620' => 'spe', 'Sopen03g003170' => 'spe', 'Sopen03g012830' => 'spe', 'Sopen03g032280' => 'spe', 'Sopen06g027350' => 'spe', 'Sp2g25910' => 'spa', 'Sp3g00810' => 'spa', 'Sp5g24950' => 'spa', 'Sp6g13810' => 'spa', 'TAR305G0003' => 'tar', 'TAR374G1040' => 'tar', 'TAR374G1298' => 'tar', 'TAR374G1386' => 'tar', 'TAR375G0139' => 'tar', 'TAR375G0198' => 'tar', 'TAR622G0698' => 'tar', 'TAR622G0994' => 'tar', 'THA.LOC104811512' => 'tha', 'THA.LOC104818238' => 'tha', 'THA.LOC104822098' => 'tha', 'THA.LOC104822373' => 'tha', 'THA.LOC104825069' => 'tha', 'Thecc.02G354800' => 'tca', 'Thecc.03G079200' => 'tca', 'Thecc.03G160800' => 'tca', 'Thecc.04G075000' => 'tca', 'Thhalv10004721m.g' => 'esa', 'Thhalv10008779m.g' => 'esa', 'Thhalv10014263m.g' => 'esa', 'Thhalv10018966m.g' => 'esa', 'Thhalv10021268m.g' => 'esa', 'TPR.G10677' => 'tpr', 'TPR.G33282' => 'tpr', 'TPR.G36102' => 'tpr', 'TPR.G38389' => 'tpr', 'TPR.G38432' => 'tpr', 'TPR.G38451' => 'tpr', 'TPR.G4347' => 'tpr', 'TWI14G0503' => 'twi', 'TWI23G0285' => 'twi', 'TWI34G0444' => 'twi', 'TWI60G0386' => 'twi', 'TWI75G0643' => 'twi', 'TWI81G0153' => 'twi', 'unitig_0.g2668' => 'ugi', 'unitig_46.g18772' => 'ugi', 'vmacro03692' => 'vma', 'vmacro04973' => 'vma', 'vmacro05734' => 'vma', 'vmacro06771' => 'vma', 'vmacro09888' => 'vma', 'vmacro16326' => 'vma', 'vmacro17508' => 'vma', 'vmacro18211' => 'vma', 'VMungo0251G0628' => 'vmu', 'VMungo0356G0001' => 'vmu', 'VMungo0464G0368' => 'vmu', 'VMungo0464G1022' => 'vmu', 'VMungo1215G2641' => 'vmu', 'Zm00001eb083000' => 'zma', 'Zm00001eb098560' => 'zma', 'Zm00001eb160670' => 'zma', 'Zm00001eb178690' => 'zma', 'Zm00001eb269970' => 'zma', 'Zm00001eb297390' => 'zma' ) $gf_id = 'HOM05D000898' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000898' ) $data_identifier = 'HOM05D000898' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 16, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 14, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 19, 'ath' => (int) 4, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 4, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 4, 'cbr' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 6, 'cpa' => (int) 3, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 9, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 12, 'fan' => (int) 14, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 13, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 18, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 9, 'lja' => (int) 13, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 1, 'mdo' => (int) 10, 'mtr' => (int) 10, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 7, 'nta' => (int) 16, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 4, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 15, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 6, 'sgi' => (int) 15, 'sas' => (int) 5, 'shi' => (int) 5, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb297390' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1